PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g18900.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 144aa    MW: 16357.6 Da    PI: 9.9543
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g18900.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.7e-181564255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     y+G+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  Vang01g18900.2 15 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYTTPVAAARAYDTAVFYLRG 64
                    69*****99.**********9...336*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.45E-211573IPR016177DNA-binding domain
PROSITE profilePS5103222.1281572IPR001471AP2/ERF domain
SMARTSM003807.8E-371578IPR001471AP2/ERF domain
CDDcd000184.81E-281674No hitNo description
Gene3DG3DSA:3.30.730.102.5E-301673IPR001471AP2/ERF domain
PRINTSPR003676.2E-121627IPR001471AP2/ERF domain
PfamPF008478.7E-111664IPR001471AP2/ERF domain
PRINTSPR003676.2E-125474IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0042538Biological Processhyperosmotic salinity response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
LEKSKKQRCE KPMKPYRGIR MRKWGKWVAE IREPNKRSRI WLGSYTTPVA AARAYDTAVF  60
YLRGPSARLN FPELLFQDEV DGANDDDSVN MSADSIRRKA TQVGARVDAL QTALHHHAPS  120
HNPTLISLKP DLNEFPKLED LQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-151472463ATERF1
3gcc_A2e-151472463ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00188DAPTransfer from AT1G46768Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014503733.11e-101PREDICTED: ethylene-responsive transcription factor RAP2-1
SwissprotQ8LC303e-51RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLA0A0S3RQD11e-104A0A0S3RQD1_PHAAN; Uncharacterized protein
STRINGGLYMA14G09320.19e-77(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.12e-52related to AP2 1